PyNutil.read_segmentation_dir#

PyNutil.read_segmentation_dir(folder, pixel_id=None, segmentation_format='binary')[source]#

Discover segmentation image files in folder and return an ImageSeries.

Images are not loaded immediately — each section loads its image on demand when the pipeline processes it.

Parameters:

  • folder (str or os.PathLike) – Path to a folder containing segmentation image files.

  • pixel_id (str, sequence of int, numpy.ndarray, or None) – RGB value or label identifying the segmented class of interest. Defaults to [0, 0, 0].

  • segmentation_format (str) – Name of the segmentation adapter to use, for example "binary" or "cellpose".

Returns:

One Section per discovered file, with section_number inferred from the filename and path set for lazy loading.

Return type:

ImageSeries